Bioinformatics Research Associate

Summary

A Research Associate position with project management duties is open in the Mueller lab at the BTI in the field of bioinformatics, with a focus on databases.

Lab overview

The Mueller lab at the Boyce Thompson Institute (https://btiscience.org/), which maintains several advanced databases, including the Solgenomics (https://solgenomics.net/), Cassavabase (https://cassavabase.org/) and Citrusgreening.org (https://citrusgreening.org/), has an open position for a Research Associate in the field of bioinformatics, genomic and breeding databases,omics analysis, and genome sequencing and annotation. The genomics databases (e.g. https://citrusgreening.org/ and https://agrivectors.org/) contain genomics, marker, phenotype and transcriptomics information and also comprise genome browsers, an expression atlas, and a pathway database. The main goal of the project is to support the research community in the search of treatments for the citrusgreening disease as well as other diseases.

Skills

Major responsibilities will include leading genomics and transcriptomics analysis, genome annotation, code development and maintenance of genomics databases and websites. Proficiency in Perl, BioPerl, shell scripting , JavaScript, jQuery and a good working knowledge of Linux (Debian), git, PostgreSQL, ontologies and web servers (Catalyst, apache2, nginx) is desired. Experience with genome and transcriptome assembly, manual gene annotation using Apollo and mentoring undergraduate and graduate students will be a plus.

Essential Job Functions

• Develop an increasingly independent research program in the context of the lab
• Interact closely with collaborators for Citrusgreening HLB therapy, ACP genome annotation and AgriVectors projects and the respective research communities
• Conduct and document research; interpret results and design new lines of bioinformatics analysis and potential experimental inquiry
• Author publications and presentations
• Contribute to securing extramural funding for the laboratory’s research program
• Participate and present in group meetings, institute seminars, national and international research conferences

Education

Doctoral degree (Ph.D.) or equivalent in a related scientific field. A background in programming, databases and computational biology with strong interests in plant and insect/ vector biology is desired.

Experience and Knowledge

3-5 years of relevant experience, generally as a Postdoctoral Scientist. Ability to work independently.

Supervisory Responsibilities

Supervision and mentoring of undergraduate student workers, graduate students, and/or research assistants as required

Communication Skills

Effective written and verbal communication and interpersonal skills required. Ability to maintain accurate and thorough documentation. Ability to draft manuscripts and develop presentation materials. Ability to write protocols for bioinformatics analysis. Ability to present information to groups internal and external to the Institute.

Travel

Occasional travel to off-site meetings or conferences. Occasional fieldwork may be required.

Physical Demands and Working Conditions

Some physical exertion may be required such as long periods of standing, recurring bending and occasional lifting. Ability to lift up to 50 pounds. The work is conducted in a laboratory setting with regular use of chemicals or equipment/materials requiring use of personnel protective equipment and routine precautions. May require occasional early morning, evening or weekend work.

This job description does not list all the duties of the job. You may be asked to perform other duties. BTI has the right to revise this job description at any time. The job description is not a contract for employment.

The Boyce Thompson Institute provides equal employment opportunities to all employees and applicants for employment and prohibits discrimination and harassment of any type without regard to race, color, religion, age, sex, national origin, disability status, genetics, protected veteran status, sexual orientation, gender identity or expression, or any other characteristic protected by federal, state or local laws. If you require an accommodation for a disability in order to complete an employment application or to participate in the recruiting process, you are encouraged to send a request for assistance to btihr@cornell.edu. BTI prides itself on family-friendly policies and is committed to helping its staff achieve career success with an appropriate life balance.